Carlos J. Paredes Home Page

Links

Digitizing Software

Engauge Digitizer

Gel Analysis

ImageJ

Graphics and Scientific Plots

The GIMP

Gnuplot

Inkscape

Hidden Markov Models

HMMER

Internet Applications

Cesar FTP

Firefox

FTP Explorer

Mozilla Calendar

Thunderbird

Logos

HMM-Logo

Web-Logo

Microarray Data Analysis

Cluster

Java Treeview

MeV

Network Visualization

Biolayout

Pajek

Phylogenetics

Phylip

Plasmid Design

pDRAW32

Postscript and Portable Document Format (PDF) utilities

GSview

PDF Creator

Primer Design

Primer-3

RNA Modelling

Vienna RNA package

Sequence Alignment and Visualization

ClustalW

Jalview

Seaview

Sequence Annotation

Artemis

Sequence Domain Analysis

Pfam

SMART